PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31714.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 326aa    MW: 36590.4 Da    PI: 6.6398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31714.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.6e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
       KHN31714.1 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP

2Myb_DNA-binding47.73.7e-1568110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  E++ +v+++  +G++ W++Ia+ ++ gRt++++k++w++
       KHN31714.1  68 GQFSDSEEQTIVKLHSVFGNR-WSLIAAQLP-GRTDNDVKNHWNT 110
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.617965IPR017930Myb domain
SuperFamilySSF466893.67E-2911108IPR009057Homeodomain-like
SMARTSM007176.0E-141363IPR001005SANT/Myb domain
PfamPF002493.2E-171461IPR001005SANT/Myb domain
CDDcd001672.27E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2465116IPR009057Homeodomain-like
SMARTSM007175.8E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129420.79966116IPR017930Myb domain
PfamPF002491.8E-1368110IPR001005SANT/Myb domain
CDDcd001671.00E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SDSEEQTIVK LHSVFGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLMAEIATTL APPQAAHLAE AALGCFKDEV LHLLTKKPIN FHQGQHSTAA  180
LENNFTDYIN CKPDEKDTAI EKIKFDLSKA IQHEPEMMPA NKPWDSNATT SANFVMPYGV  240
FPTMPGFQLS PATFGKGDDA SPWSQSVCTG STCTVMDQQS QLHEKLEDEI GDDSEATKEI  300
RNLSNIFNSD CVVWDLPTDD LINPMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552981.10.0PREDICTED: transcription factor MYB35-like
SwissprotQ7XQN11e-121MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A0B2RHC70.0A0A0B2RHC7_GLYSO; Transcription factor MYB39
STRINGGLYMA18G07960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-110myb domain protein 103
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]